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Sample GSM2407464 Query DataSets for GSM2407464
Status Public on Nov 25, 2017
Title TW14
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 3.183519646
7892502 6.471036133
7892503 6.322707827
7892504 12.06647447
7892505 3.850206794
7892506 4.063929936
7892507 5.545938479
7892508 2.323336049
7892509 6.81952425
7892510 5.217317268
7892511 4.251449746
7892512 7.582037113
7892513 3.627675618
7892514 11.18773438
7892515 11.65506587
7892516 3.353807975
7892517 5.705874014
7892518 3.179027512
7892519 6.213035725
7892520 11.68813519

Total number of rows: 257430

Table truncated, full table size 4995 Kbytes.




Supplementary file Size Download File type/resource
GSM2407464_TW14.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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