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Sample GSM2407463 Query DataSets for GSM2407463
Status Public on Nov 25, 2017
Title TW13
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 2.373923128
7892502 5.77894195
7892503 4.999646687
7892504 11.96698395
7892505 4.583995035
7892506 5.456904856
7892507 6.201985842
7892508 4.410186877
7892509 10.52954804
7892510 4.087622416
7892511 5.533687879
7892512 8.092835638
7892513 4.231401974
7892514 11.30849281
7892515 11.20246801
7892516 3.405727342
7892517 6.150565994
7892518 2.930622036
7892519 7.554502657
7892520 11.7269253

Total number of rows: 257430

Table truncated, full table size 4999 Kbytes.




Supplementary file Size Download File type/resource
GSM2407463_TW13.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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