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Sample GSM2407454 Query DataSets for GSM2407454
Status Public on Nov 25, 2017
Title TNK5
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 2.326685558
7892502 7.641289364
7892503 4.492956969
7892504 12.24270807
7892505 5.367110501
7892506 3.773865878
7892507 5.336597687
7892508 3.969717935
7892509 4.279892385
7892510 3.965817379
7892511 5.321021821
7892512 9.53453784
7892513 2.812792348
7892514 11.24125954
7892515 11.42154683
7892516 4.575648351
7892517 4.80938708
7892518 3.303005661
7892519 6.653434174
7892520 11.78676465

Total number of rows: 257430

Table truncated, full table size 5003 Kbytes.




Supplementary file Size Download File type/resource
GSM2407454_TNK5.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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