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Sample GSM2407451 Query DataSets for GSM2407451
Status Public on Nov 25, 2017
Title TNK1
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 2.894687276
7892502 8.910163119
7892503 6.655472803
7892504 12.19981994
7892505 3.712461879
7892506 5.277199452
7892507 4.662015856
7892508 2.955021491
7892509 6.260160763
7892510 4.802374446
7892511 7.459030553
7892512 7.613547351
7892513 3.15368654
7892514 11.51364844
7892515 11.23343957
7892516 5.000960532
7892517 5.986773202
7892518 3.3810737
7892519 6.581691677
7892520 11.7670544

Total number of rows: 257430

Table truncated, full table size 5005 Kbytes.




Supplementary file Size Download File type/resource
GSM2407451_TNK1.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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