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Sample GSM2407444 Query DataSets for GSM2407444
Status Public on Nov 25, 2017
Title T35
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 2.345929422
7892502 5.671208264
7892503 4.179585707
7892504 12.0286263
7892505 4.628992607
7892506 3.55618936
7892507 5.005502449
7892508 3.861662072
7892509 8.612098247
7892510 5.305133934
7892511 4.490139844
7892512 8.667773611
7892513 4.960006514
7892514 11.91699643
7892515 11.96984891
7892516 4.63662807
7892517 5.183899437
7892518 5.367123197
7892519 8.142168343
7892520 11.64154159

Total number of rows: 257430

Table truncated, full table size 4999 Kbytes.




Supplementary file Size Download File type/resource
GSM2407444_T35.CEL.gz 3.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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