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Sample GSM2407434 Query DataSets for GSM2407434
Status Public on Nov 25, 2017
Title MD04
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 2.98541248
7892502 10.0509535
7892503 7.021489708
7892504 11.85890165
7892505 3.783579858
7892506 4.182959595
7892507 7.243885255
7892508 6.396913001
7892509 2.777399065
7892510 6.7320937
7892511 5.409726248
7892512 8.211460563
7892513 6.910344998
7892514 12.25764423
7892515 11.35197124
7892516 5.899374489
7892517 7.15120776
7892518 3.744531527
7892519 6.023401119
7892520 12.15511612

Total number of rows: 257430

Table truncated, full table size 5011 Kbytes.




Supplementary file Size Download File type/resource
GSM2407434_MD04.CEL.gz 2.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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