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Sample GSM2407419 Query DataSets for GSM2407419
Status Public on Nov 25, 2017
Title NKTL40
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 2.655905804
7892502 6.951850016
7892503 4.554449546
7892504 11.94731994
7892505 6.594145891
7892506 5.604588832
7892507 6.277955021
7892508 7.20001373
7892509 10.4330917
7892510 6.36444807
7892511 6.57901296
7892512 8.265303152
7892513 3.749552321
7892514 11.88172609
7892515 11.24057841
7892516 7.330988686
7892517 6.066680694
7892518 3.090766937
7892519 6.948370441
7892520 11.42406317

Total number of rows: 257430

Table truncated, full table size 4994 Kbytes.




Supplementary file Size Download File type/resource
GSM2407419_NKTL40.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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