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Sample GSM2402535 Query DataSets for GSM2402535
Status Public on May 02, 2017
Title Embryo Uvea 11 weeks of gestation (11.3 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 11 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 11.3 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.783982647609849
cg00212031 0.00433868587954539
cg00213748 0.82391956550631
cg00214611 0.0198871201950286
cg00455876 0.623248863362333
cg01707559 0.0585419304252797
cg02004872 0.0146653938116422
cg02011394 0.951650323118761
cg02050847 0.939429741844983
cg02233190 0.0342334339842773
cg02494853 0.0120467765284597
cg02839557 0.0211403117363637
cg02842889 0.00663112281210086
cg03052502 0.980495484251662
cg03155755 0.912571965846886
cg03244189 0.00405697420157028
cg03443143 0.85029344307352
cg03683899 0
cg03695421 0.62215344606838
cg03706273 0.0185540772502144

Total number of rows: 485512

Table truncated, full table size 13791 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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