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Sample GSM2402534 Query DataSets for GSM2402534
Status Public on May 02, 2017
Title Embryo Sclera 21 weeks of gestation (21.1 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 21 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 21.1 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.874091851818027
cg00212031 0.230127230410904
cg00213748 0.257856801448206
cg00214611 0.185157314404618
cg00455876 0.266644751908623
cg01707559 0.25126263066724
cg02004872 0.102559779511658
cg02011394 0.940290989790806
cg02050847 0.740155067252314
cg02233190 0.0874674308315453
cg02494853 0.0040895636302229
cg02839557 0.0333456238603839
cg02842889 0.161655164202005
cg03052502 0.904988478157336
cg03155755 0.769907696324025
cg03244189 0.0414259446940735
cg03443143 0.922464385526542
cg03683899 0.0239628243930104
cg03695421 0.251676358865324
cg03706273 0

Total number of rows: 485512

Table truncated, full table size 13772 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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