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Sample GSM2402533 Query DataSets for GSM2402533
Status Public on May 02, 2017
Title Embryo Retina 21 weeks of gestation (21.3 retina)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: retina
health state: Healthy donor
time: 21 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 21.3 retina
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.797894603502534
cg00212031 0.00403634259160537
cg00213748 0.806885035943734
cg00214611 0.0235906724980149
cg00455876 0.637434810099411
cg01707559 0.0925447082186946
cg02004872 0.0188279316951648
cg02011394 0.952782237724045
cg02050847 0.939405370067132
cg02233190 0.0156965121944727
cg02494853 0.018681436988387
cg02839557 0.0336150962373533
cg02842889 0.00147983378009621
cg03052502 0.988204974855756
cg03155755 0.921358458341941
cg03244189 0.0558137904769586
cg03443143 0.884262820525439
cg03683899 0
cg03695421 0.655006244240368
cg03706273 0.0530470844927938

Total number of rows: 485512

Table truncated, full table size 13781 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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