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Sample GSM2402532 Query DataSets for GSM2402532
Status Public on May 02, 2017
Title Embryo Retina 17 weeks of gestation (17.2 retina)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: retina
health state: Healthy donor
time: 17 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 17.2 retina
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.616761465833631
cg00212031 0.0282264424955897
cg00213748 0.464437010581963
cg00214611 0.0795899030303141
cg00455876 0.386739427320952
cg01707559 0.0952579124257965
cg02004872 0.0310107811937001
cg02011394 0.828517379109888
cg02050847 0.827717112535752
cg02233190 0.0180566134325947
cg02494853 0.01377397062352
cg02839557 0.0298093280652945
cg02842889 0.0375787858956937
cg03052502 0.891460077564522
cg03155755 0.784614082809607
cg03244189 0.0309677563028254
cg03443143 0.681883012903135
cg03683899 0.0164202487233608
cg03695421 0.446878558158688
cg03706273 0.0100739354979997

Total number of rows: 485512

Table truncated, full table size 13825 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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