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Sample GSM2402531 Query DataSets for GSM2402531
Status Public on May 02, 2017
Title Embryo Uvea 21 weeks of gestation (21.3 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 21 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 21.3 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.758455372940293
cg00212031 0
cg00213748 0.445081509678585
cg00214611 0.0595788655871619
cg00455876 0.495500217038757
cg01707559 0.0847778925447514
cg02004872 0.0391225805409466
cg02011394 0.919005090300802
cg02050847 0.933761709708513
cg02233190 0.0337899817501558
cg02494853 0.00904715211327098
cg02839557 0.00204444404715092
cg02842889 0.013904402453129
cg03052502 0.968275383023773
cg03155755 0.899292037866991
cg03244189 0.0489130337136659
cg03443143 0.852769463432356
cg03683899 0.00755260917806099
cg03695421 0.40639533785239
cg03706273 0.00808253547934281

Total number of rows: 485512

Table truncated, full table size 13829 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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