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Sample GSM2402530 Query DataSets for GSM2402530
Status Public on May 02, 2017
Title Embryo Uvea 21 weeks of gestation (21.2 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 21 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 21.2 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.612824630500853
cg00212031 0.00129032932610977
cg00213748 0.545856363683951
cg00214611 0.0417325497296366
cg00455876 0.436748096774514
cg01707559 0.0574433337720798
cg02004872 0.0247152017241377
cg02011394 0.793389780528506
cg02050847 0.879639964904631
cg02233190 0.347063814871031
cg02494853 0.0100090826201978
cg02839557 0.0165637847622698
cg02842889 0.0143214493062823
cg03052502 0.932589753908174
cg03155755 0.789917127402413
cg03244189 0.041424321925913
cg03443143 0.684894497009042
cg03683899 0.0106177275175544
cg03695421 0.446819537701666
cg03706273 0.0113152022726724

Total number of rows: 485512

Table truncated, full table size 13820 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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