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Sample GSM2402529 Query DataSets for GSM2402529
Status Public on May 02, 2017
Title Embryo Uvea 11 weeks of gestation (11.2 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 11 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 11.2 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.65014959671988
cg00212031 0
cg00213748 0.675638737691711
cg00214611 0.0295034773721472
cg00455876 0.482622761045725
cg01707559 0.0686120877394224
cg02004872 0.062839842522257
cg02011394 0.832361258771265
cg02050847 0.878865992419141
cg02233190 0.0192202244287102
cg02494853 0.0171800522828231
cg02839557 0.000897557505735716
cg02842889 0.00298507817313085
cg03052502 0.950923049438836
cg03155755 0.821573026426149
cg03244189 0.024443793770542
cg03443143 0.750077138899648
cg03683899 0.0108571552026322
cg03695421 0.644562972121889
cg03706273 0.00735828002141456

Total number of rows: 485512

Table truncated, full table size 13810 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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