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Sample GSM2402528 Query DataSets for GSM2402528
Status Public on May 02, 2017
Title Embryo Sclera 17 weeks of gestation (17.1 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 17 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 17.1 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.847208282626264
cg00212031 0
cg00213748 0.325998021424288
cg00214611 0.381840875001368
cg00455876 0.25587032396042
cg01707559 0.189260561335803
cg02004872 0.154840397342085
cg02011394 0.879930891205055
cg02050847 0.608622318272171
cg02233190 0.183350182040342
cg02494853 0.0129239229034527
cg02839557 0.209432256124635
cg02842889 0.155815652192403
cg03052502 0.88771947083494
cg03155755 0.777129771650143
cg03244189 0.0865271088245172
cg03443143 0.853436669993822
cg03683899 0.0814027814776
cg03695421 0.25928097319428
cg03706273 0.0101521187181922

Total number of rows: 485512

Table truncated, full table size 13816 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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