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Sample GSM2402527 Query DataSets for GSM2402527
Status Public on May 02, 2017
Title Embryo Sclera 21 weeks of gestation (21.2 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 21 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 21.2 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.81470400670412
cg00212031 0.136607704578039
cg00213748 0.573290920030457
cg00214611 0.191681058489715
cg00455876 0.423662603398422
cg01707559 0.246083500548562
cg02004872 0.159657199513102
cg02011394 0.958045473790823
cg02050847 0.807188447668106
cg02233190 0.108674655815161
cg02494853 0.0150415478217719
cg02839557 0.140328092428342
cg02842889 0.0969215682112611
cg03052502 0.919430096876931
cg03155755 0.906672822041389
cg03244189 0.126370777583519
cg03443143 0.896368076554662
cg03683899 0.0517724204721176
cg03695421 0.446869580551552
cg03706273 0.0183814069364909

Total number of rows: 485512

Table truncated, full table size 13826 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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