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Sample GSM2402526 Query DataSets for GSM2402526
Status Public on May 02, 2017
Title Embryo Sclera 17 weeks of gestation (17.3 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 17 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 17.3 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.782988153566295
cg00212031 0.137827678471689
cg00213748 0.779890913939303
cg00214611 0.0354440704464176
cg00455876 0.645313646823819
cg01707559 0.198917291398309
cg02004872 0.0234364901332706
cg02011394 0.938659671737443
cg02050847 0.968425528365499
cg02233190 0.0239512891282568
cg02494853 0.114377529515018
cg02839557 0.12987012476972
cg02842889 0.00869561435313892
cg03052502 0.990061937663986
cg03155755 0.914244981564137
cg03244189 0.272660978810683
cg03443143 0.859400321924018
cg03683899 0.0117722435145594
cg03695421 0.685229464426615
cg03706273 0.224789932243228

Total number of rows: 485512

Table truncated, full table size 13803 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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