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Sample GSM2402525 Query DataSets for GSM2402525
Status Public on May 02, 2017
Title Embryo Retina 17 weeks of gestation (17.3 retina)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: retina
health state: Healthy donor
time: 17 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 17.3 retina
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.827751108585699
cg00212031 0.0323779124313777
cg00213748 0.829056523871534
cg00214611 0.0237500288277013
cg00455876 0.663477111060824
cg01707559 0.0627550245615712
cg02004872 0.0339063464512867
cg02011394 0.961124604055173
cg02050847 0.961123024880292
cg02233190 0.0209868954422385
cg02494853 0.0466597745125381
cg02839557 0.0202157195936688
cg02842889 0.0143787568941315
cg03052502 0.980368395185545
cg03155755 0.900820721043603
cg03244189 0.0401212137642787
cg03443143 0.868528963342697
cg03683899 0.00608982361795567
cg03695421 0.592540092063114
cg03706273 0.045088840089397

Total number of rows: 485512

Table truncated, full table size 13822 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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