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Sample GSM2402524 Query DataSets for GSM2402524
Status Public on May 02, 2017
Title Embryo Sclera 17 weeks of gestation (17.2 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 17 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 17.2 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.856808981258162
cg00212031 0.0880557695365209
cg00213748 0.72358982044099
cg00214611 0.24269068422129
cg00455876 0.550634055849202
cg01707559 0.195627006700585
cg02004872 0.184020282027235
cg02011394 0.9476273022211
cg02050847 0.898852448862459
cg02233190 0.0553467768872036
cg02494853 0.028747118893341
cg02839557 0.143803060673116
cg02842889 0.0659803022277217
cg03052502 0.943328513987795
cg03155755 0.947669423005395
cg03244189 0.0421152822589488
cg03443143 0.915539854097708
cg03683899 0.016988851621236
cg03695421 0.579235234332074
cg03706273 0.0368559127917175

Total number of rows: 485512

Table truncated, full table size 13828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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