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Sample GSM2402523 Query DataSets for GSM2402523
Status Public on May 02, 2017
Title Embryo Uvea 11 weeks of gestation (11.1 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 11 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 11.1 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.802991970625219
cg00212031 0.0432968842551234
cg00213748 0.817518703620448
cg00214611 0.00042169079298254
cg00455876 0.694914191128904
cg01707559 0.100779820706628
cg02004872 0.0201563063732856
cg02011394 0.950384512907171
cg02050847 0.954591438345978
cg02233190 0.0131312411380205
cg02494853 0.0692495184607679
cg02839557 0.0398595018297153
cg02842889 0.0152035961538592
cg03052502 0.986433912751343
cg03155755 0.935234013821134
cg03244189 0.098748928027017
cg03443143 0.873423869854986
cg03683899 0
cg03695421 0.749400449207749
cg03706273 0.226414206789354

Total number of rows: 485512

Table truncated, full table size 13816 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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