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Sample GSM2402522 Query DataSets for GSM2402522
Status Public on May 02, 2017
Title Embryo Retina 17 weeks of gestation (17.1 retina)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: retina
health state: Healthy donor
time: 17 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 17.1 retina
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.836849842452235
cg00212031 0.0219838600541284
cg00213748 0.884627722281378
cg00214611 0.00242515153794194
cg00455876 0.644529073246312
cg01707559 0.0670670453410446
cg02004872 0.0126539195376644
cg02011394 0.960798812990242
cg02050847 0.92592543397001
cg02233190 0.00547010027227235
cg02494853 0.00779764545550033
cg02839557 0.0226116968439409
cg02842889 0.00998149694102443
cg03052502 0.979511855699554
cg03155755 0.917530271188408
cg03244189 0.0134836004607489
cg03443143 0.887277317164411
cg03683899 0.00667847391717973
cg03695421 0.587096750744516
cg03706273 0.00748450691097432

Total number of rows: 485512

Table truncated, full table size 13849 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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