GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2402521 Query DataSets for GSM2402521
Status Public on May 02, 2017
Title Embryo Retina 14 weeks of gestation (14.2 retina)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: retina
health state: Healthy donor
time: 14 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 14.2 retina
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.831741618780752
cg00212031 0.0152852201992052
cg00213748 0.780098828219095
cg00214611 0.00915693369960649
cg00455876 0.674690324415837
cg01707559 0.0392558915333408
cg02004872 0.0197427681042032
cg02011394 0.95570375695888
cg02050847 0.928705282501777
cg02233190 0.0558226552205068
cg02494853 0.00627450349051534
cg02839557 0.0199144677219754
cg02842889 0.0117518159236793
cg03052502 0.97706487244871
cg03155755 0.90728551999032
cg03244189 0.00639997701042201
cg03443143 0.879173809370692
cg03683899 0.000475962809541632
cg03695421 0.693668816868408
cg03706273 0.00498939194132258

Total number of rows: 485512

Table truncated, full table size 13836 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap