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Sample GSM2402520 Query DataSets for GSM2402520
Status Public on May 02, 2017
Title Embryo Sclera 21 weeks of gestation (21.3 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 21 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 21.3 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.831855169361476
cg00212031 0.176008373420647
cg00213748 0.272970979663247
cg00214611 0.115493676255789
cg00455876 0.34460023344354
cg01707559 0.11658021911619
cg02004872 0.137272727683166
cg02011394 0.920687259837299
cg02050847 0.505744992934315
cg02233190 0.107131414472462
cg02494853 0.0122060509513475
cg02839557 0
cg02842889 0
cg03052502 0.709957972786271
cg03155755 0.758517799645576
cg03244189 0.0721525588042164
cg03443143 0.801066347842268
cg03683899 0.0703485670125506
cg03695421 0.293964959195846
cg03706273 0.0104366022321484

Total number of rows: 485512

Table truncated, full table size 13810 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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