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Sample GSM2402519 Query DataSets for GSM2402519
Status Public on May 02, 2017
Title Embryo Uvea 17 weeks of gestation (17.3 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 17 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 17.3 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.72717215208146
cg00212031 0.231135682733619
cg00213748 0.06060935971976
cg00214611 0.462503292637934
cg00455876 0.109713380483191
cg01707559 0.219188666027024
cg02004872 0.102229672555895
cg02011394 0.713746164020667
cg02050847 0.32516512361218
cg02233190 0.157891004736245
cg02494853 0.0142750399505987
cg02839557 0.017506640247232
cg02842889 0.102321520401869
cg03052502 0.656385307687134
cg03155755 0.584581333684192
cg03244189 0.0359995904187532
cg03443143 0.718537865320802
cg03683899 0
cg03695421 0.144618634856162
cg03706273 0.00272074904572598

Total number of rows: 485512

Table truncated, full table size 13832 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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