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Sample GSM2402518 Query DataSets for GSM2402518
Status Public on May 02, 2017
Title Embryo Sclera 14 weeks of gestation (14.3 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 14 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 14.3 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.80971302576145
cg00212031 0.0172417260792259
cg00213748 0.772280281291843
cg00214611 0
cg00455876 0.671146301969088
cg01707559 0.0585406480528326
cg02004872 0.0292947102290527
cg02011394 0.943847983963462
cg02050847 0.89816326469123
cg02233190 0.0433147757619848
cg02494853 0.0172205900249546
cg02839557 0.0201046176422403
cg02842889 0.0114258579462845
cg03052502 0.980109879996591
cg03155755 0.891556668765535
cg03244189 0.0393666695114923
cg03443143 0.849750594137376
cg03683899 0.0072782450446258
cg03695421 0.579074236483909
cg03706273 0.00727284330866935

Total number of rows: 485512

Table truncated, full table size 13835 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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