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Sample GSM2402517 Query DataSets for GSM2402517
Status Public on May 02, 2017
Title Embryo Uvea 17 weeks (17.1 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 17 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 17.1 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.805160108572928
cg00212031 0.0191614048396532
cg00213748 0.781390922590597
cg00214611 0.0245049578122101
cg00455876 0.66368164097966
cg01707559 0.0417230465034558
cg02004872 0.0127438455163255
cg02011394 0.96415130113962
cg02050847 0.959290111184856
cg02233190 0.0220877461045785
cg02494853 0.0154400279270525
cg02839557 0.0238269317297366
cg02842889 0.0060387504712417
cg03052502 0.974471685920846
cg03155755 0.914281667808698
cg03244189 0.021090875432432
cg03443143 0.88995083604673
cg03683899 0.00688667594877381
cg03695421 0.636807616445707
cg03706273 0.0169621897653477

Total number of rows: 485512

Table truncated, full table size 13831 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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