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Sample GSM2402516 Query DataSets for GSM2402516
Status Public on May 02, 2017
Title Embryo Uvea 14 weeks of gestation (14.2 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 14 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 14.2 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.851492200766244
cg00212031 0.418558783433319
cg00213748 0.300784939261686
cg00214611 0.261269117914476
cg00455876 0.245688191340324
cg01707559 0.0903889772316251
cg02004872 0.235393587497183
cg02011394 0.964162155055601
cg02050847 0.821132647640474
cg02233190 0.108508088913785
cg02494853 0.0182994934093016
cg02839557 0.326727789944341
cg02842889 0.266075714845127
cg03052502 0.935043189085627
cg03155755 0.826535239887101
cg03244189 0.00184544523910239
cg03443143 0.912943012388853
cg03683899 0.13022580861971
cg03695421 0.497961777453961
cg03706273 0.00939761994972103

Total number of rows: 485512

Table truncated, full table size 13793 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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