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Sample GSM2402515 Query DataSets for GSM2402515
Status Public on May 02, 2017
Title Embryo sclera 14 weeks of gestation (14.1 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 14 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 14.1 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.842857523865508
cg00212031 0.27509656821151
cg00213748 0.380167767927885
cg00214611 0.207179916220378
cg00455876 0.492860521383294
cg01707559 0.165194292117435
cg02004872 0.0973536948494744
cg02011394 0.959821606193885
cg02050847 0.844491714668012
cg02233190 0.0577987394068362
cg02494853 0.0103405634333335
cg02839557 0.101269216754033
cg02842889 0.0495765183957889
cg03052502 0.944227433564283
cg03155755 0.900905204634409
cg03244189 0.0993543631391513
cg03443143 0.923171222684675
cg03683899 0.0453320453193073
cg03695421 0.309406120174149
cg03706273 0.0122088442327802

Total number of rows: 485512

Table truncated, full table size 13831 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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