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Sample GSM2402514 Query DataSets for GSM2402514
Status Public on May 02, 2017
Title Embryo Retina 21 weeks of gestation (21.2 retina)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: retina
health state: Healthy donor
time: 21 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 21.2 retina
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.851209921349175
cg00212031 0.0810223307283953
cg00213748 0.383574112437294
cg00214611 0.322904095652553
cg00455876 0.361589295521232
cg01707559 0.106446310030923
cg02004872 0.136105790867737
cg02011394 0.954154575229962
cg02050847 0.756679405589376
cg02233190 0.0862775928681533
cg02494853 0.0228364635102388
cg02839557 0.103637699865108
cg02842889 0.0532425611595149
cg03052502 0.93937701404051
cg03155755 0.887413288492422
cg03244189 0.0729960619949378
cg03443143 0.918792423683468
cg03683899 0
cg03695421 0.418325868514379
cg03706273 0.0174783782788033

Total number of rows: 485512

Table truncated, full table size 13824 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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