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Sample GSM2402513 Query DataSets for GSM2402513
Status Public on May 02, 2017
Title Embryo Uvea 14 weeks of gestation (14.1 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 14 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 14.1 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.849880850995976
cg00212031 0.0298417938788906
cg00213748 0.443293272968615
cg00214611 0.156290396386421
cg00455876 0.476353336918437
cg01707559 0.170300301513698
cg02004872 0.100894036081317
cg02011394 0.962421132661337
cg02050847 0.804851648492709
cg02233190 0.0329645259833465
cg02494853 0.0232850169348367
cg02839557 0.0274192808862324
cg02842889 0.0279589804762844
cg03052502 0.926496861335493
cg03155755 0.903785947286752
cg03244189 0.122981960147375
cg03443143 0.910007689568636
cg03683899 0.0315092836843252
cg03695421 0.374848355846507
cg03706273 0.0166224816253244

Total number of rows: 485512

Table truncated, full table size 13832 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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