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Sample GSM2402512 Query DataSets for GSM2402512
Status Public on May 02, 2017
Title Embryo Sclera 14 weeks of gestation (14.2 sclera)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: sclera
health state: Healthy donor
time: 14 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 14.2 esclera
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.855629827892708
cg00212031 0.0948310652708336
cg00213748 0.129860975434158
cg00214611 0.309265265299212
cg00455876 0.466623413114135
cg01707559 0.185964925285931
cg02004872 0.116969621715719
cg02011394 0.930343140665848
cg02050847 0.778745109669915
cg02233190 0.0592467617894559
cg02494853 0.0215870444195262
cg02839557 0.0627181297388106
cg02842889 0.0602823834328709
cg03052502 0.922820271770038
cg03155755 0.885875709319154
cg03244189 0.079907966255621
cg03443143 0.896039907140698
cg03683899 0.0275818944106982
cg03695421 0.336546292964288
cg03706273 0.00630319525645211

Total number of rows: 485512

Table truncated, full table size 13830 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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