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Sample GSM2402511 Query DataSets for GSM2402511
Status Public on May 02, 2017
Title Embryo Uvea 21 weeks of gestation (21.1 uvea)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: uvea
health state: Healthy donor
time: 21 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 21.1 uvea
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.860712256543645
cg00212031 0.00463731406928173
cg00213748 0.89322828114111
cg00214611 0.0077156009070304
cg00455876 0.686342974994056
cg01707559 0.041422611792094
cg02004872 0.0116682639839342
cg02011394 0.957766958415516
cg02050847 0.955045063074973
cg02233190 0.013982790969553
cg02494853 0.0172477132120737
cg02839557 0.00882309094406598
cg02842889 0.00151497866276005
cg03052502 0.987884395651342
cg03155755 0.920409169762391
cg03244189 0.00496703709875199
cg03443143 0.915954758900003
cg03683899 0.00692937411242241
cg03695421 0.575887900752502
cg03706273 0.002683315033456

Total number of rows: 485512

Table truncated, full table size 13811 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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