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Sample GSM2402509 Query DataSets for GSM2402509
Status Public on May 02, 2017
Title Embryo Retina 11 weeks of gestation (11.1 retina)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: retina
health state: Healthy donor
time: 11 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 11.1 retina
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.871949357322906
cg00212031 0.00353399506672024
cg00213748 0.916384087179016
cg00214611 0.0291691887645464
cg00455876 0.702891986324051
cg01707559 0.0708766407567941
cg02004872 0.0167013927745097
cg02011394 0.952331342100904
cg02050847 0.948125683565644
cg02233190 0.0114006416595695
cg02494853 0.0125705702117806
cg02839557 0.00589302501134959
cg02842889 0.0157285167800456
cg03052502 0.972671942047158
cg03155755 0.926980800337612
cg03244189 0.0147633452068514
cg03443143 0.892198240219851
cg03683899 0.00781592619416663
cg03695421 0.576301414755123
cg03706273 0.00149567220427662

Total number of rows: 485512

Table truncated, full table size 13841 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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