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Sample GSM2402508 Query DataSets for GSM2402508
Status Public on May 02, 2017
Title Embryo Retina 14 weeks of gestation (14.3 retina)
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: retina
health state: Healthy donor
time: 14 weeks of gestation
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 14.3 retina
Data processing Genome Studio V2011.2
Submission date Nov 23, 2016
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.874487536417388
cg00212031 0.058892907400488
cg00213748 0.874172089644373
cg00214611 0.0157533735383149
cg00455876 0.726242693882616
cg01707559 0.0615661451516906
cg02004872 0.0147304118964469
cg02011394 0.967264661406472
cg02050847 0.904090639908888
cg02233190 0.0336258105229351
cg02494853 0.0160262104881057
cg02839557 0.011073712093011
cg02842889 0.00843420983813923
cg03052502 0.976921765000428
cg03155755 0.895276039687798
cg03244189 0.0501972004885701
cg03443143 0.91057039974965
cg03683899 0.00971234688180546
cg03695421 0.598767592007528
cg03706273 0.00559858850560957

Total number of rows: 485512

Table truncated, full table size 13834 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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