NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2400446 Query DataSets for GSM2400446
Status Public on Dec 07, 2016
Title DNase-seq from MN1 (ENCLB347XWH)
Sample type SRA
 
Source name Mus musculus strain B6NCrl MN1 immortalized cell line
Organism Mus musculus
Characteristics line: MN1
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS861BIB (SAMN06044924)
dev stage: unknown
Sex: not collected
age: unknown
lab: John Stamatoyannopoulos, UW
link: ENCBS861BIB at ENCODE; https://www.encodeproject.org/ENCBS861BIB/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
link: ENCODE dbxrefs Cellosaurus CVCL_U508; http://web.expasy.org/cellosaurus/CVCL_U508
Extracted molecule genomic DNA
Extraction protocol other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR732IZK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR732IZK
assay title: DNase-seq
assembly: mm10
encode release date: 2016-07-15
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB347XWH
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL19057
Series (1)
GSE90388 DNase-seq from MN1 (ENCSR732IZK)
Relations
BioSample SAMN06044924
SRA SRX2370742
Named Annotation GSM2400446_ENCFF854IVT_hotspots_mm10.bed.gz
Named Annotation GSM2400446_ENCFF502DZZ_peaks_mm10.bed.gz
Named Annotation GSM2400446_ENCFF590ZTG_signal_of_unique_reads_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2400446_ENCFF502DZZ_peaks_mm10.bed.gz 1.5 Mb (ftp)(http) BED
GSM2400446_ENCFF551FCR_peaks_mm10.bigBed 2.1 Mb (ftp)(http) BIGBED
GSM2400446_ENCFF590ZTG_signal_of_unique_reads_mm10.bigWig 577.4 Mb (ftp)(http) BIGWIG
GSM2400446_ENCFF684ZHR_hotspots_mm10.bigBed 2.6 Mb (ftp)(http) BIGBED
GSM2400446_ENCFF854IVT_hotspots_mm10.bed.gz 1.8 Mb (ftp)(http) BED
GSM2400446_ENCLB347XWH_README.txt.gz 704 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap