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Sample GSM2389526 Query DataSets for GSM2389526
Status Public on Oct 03, 2017
Title CS6674 Replicate 2
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6674
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6674
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 2.569211
ATRIKEN13566 2085.433
ATRIKEN08029 6.026729
ATRIKEN27822 2.576923
ATRIKEN27713 4.99827
ATRIKEN10969 2.584038
ATRIKEN20199 5183.244
ATRIKEN30075 6.803241
ATRIKEN30830 2.603013
ATRIKEN07335 74.67941
ATRIKEN13579 568.9289
ATRIKEN14133 960.0057
ATRIKEN11487 2.627227
ATRIKEN20010 993.5435
ATRIKEN12111 5122.1
ATRIKEN17481 2.657112
ATRIKEN03251 28.37556
ATRIKEN01799 11692.05
ATRIKEN23687 4529.001
ATRIKEN21530 119.3877

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389526_CS6674_rep2.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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