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Sample GSM2389525 Query DataSets for GSM2389525
Status Public on Oct 03, 2017
Title CS6674 Replicate 1
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6674
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6674
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 2.498909
ATRIKEN13566 2605.514
ATRIKEN08029 3.432658
ATRIKEN27822 2.508995
ATRIKEN27713 3.188535
ATRIKEN10969 2.518603
ATRIKEN20199 6756.009
ATRIKEN30075 2.537029
ATRIKEN30830 2.54414
ATRIKEN07335 324.3342
ATRIKEN13579 564.1628
ATRIKEN14133 1000.28
ATRIKEN11487 2.577544
ATRIKEN20010 1097.557
ATRIKEN12111 4426.297
ATRIKEN17481 2.713807
ATRIKEN03251 31.13004
ATRIKEN01799 9339.952
ATRIKEN23687 3887.017
ATRIKEN21530 111.8195

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389525_CS6674_rep1.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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