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Sample GSM2389524 Query DataSets for GSM2389524
Status Public on Oct 03, 2017
Title CS6660 Replicate 2
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6660
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6660
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 3.314116
ATRIKEN13566 2840.794
ATRIKEN08029 2.645383
ATRIKEN27822 2.649821
ATRIKEN27713 2.654126
ATRIKEN10969 2.659168
ATRIKEN20199 6669.572
ATRIKEN30075 2.674198
ATRIKEN30830 2.932868
ATRIKEN07335 52.80596
ATRIKEN13579 683.1289
ATRIKEN14133 1089.454
ATRIKEN11487 2.703322
ATRIKEN20010 1093.782
ATRIKEN12111 3966.584
ATRIKEN17481 2.730366
ATRIKEN03251 60.7453
ATRIKEN01799 5151.539
ATRIKEN23687 5713.926
ATRIKEN21530 113.4477

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389524_CS6660_rep2.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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