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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 29, 2016 |
| Title |
Input rep2 |
| Sample type |
SRA |
| |
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| Source name |
Seedlings
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| Organism |
Arabidopsis thaliana |
| Characteristics |
antibody: none, Input
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
The libraries were prepared using the NuGen Ovation Ultralow Library Systems and were sequenced in the Genomics Core Facilities of the Shanghai Center for Plant Stress Biology, SIBS, CAS (Shanghai, China) with Illumina HiSeq2500.
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
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| Description |
Input rep2
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| Data processing |
Reads were mapped to reference genome using bowtie2.
Peaks were identified using SICER.
Coverage files were generated by genomecov form BEDTools.
Genome_build: TAIR10
Supplementary_files_format_and_content: BedGraph
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| Submission date |
Oct 31, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Jian-Kang Zhu |
| E-mail(s) |
zhu132@purdue.edu
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| Organization name |
Purdue University
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| Department |
Department of Horticulture and Landscape Architecture
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| Street address |
625 Agriculture Mall Dr.
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| City |
West Lafayette |
| State/province |
IN |
| ZIP/Postal code |
47907 |
| Country |
USA |
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| Platform ID |
GPL17639 |
| Series (2) |
| GSE89318 |
ChIP-seq data for HDP2 transgenic line |
| GSE89320 |
A Pair of Transposon-derived Proteins Function in A Histone Acetyltransferase Complex for Active DNA Demethylation |
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| Relations |
| BioSample |
SAMN05954313 |
| SRA |
SRX2310528 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2365925_HDP2_IN_rep2.bedGraph.gz |
240.4 Mb |
(ftp)(http) |
BEDGRAPH |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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