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Sample GSM236545 Query DataSets for GSM236545
Status Public on Sep 02, 2009
Title Chronic myeloid leukemia CML-#16-CP-250knsp
Sample type genomic
 
Source name Chronic phase
Organism Homo sapiens
Characteristics Bone marrow
Treatment protocol Samples were obtained at different stages of disease
Growth protocol Cryopreserved peripheral blood or bone marrow samples obtained at diagnosis, during disease progression, or after treatment. Blast crisis samples were flow sorted prior to DNA extraction.
Extracted molecule genomic DNA
Extraction protocol Qiagen DNA blood mini or phenol chloroform
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol As per manufacturer (Affymetrix)
Scan protocol As per manufacturer (Affymetrix)
Description Chronic myeloid leukemia
Data processing CEL files and TXT files (generated by Affymetrix GTYPE using the DM algorithm) were processed by dChip and model-based expression performed using the PM/MM model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.
 
Submission date Oct 10, 2007
Last update date Sep 02, 2009
Contact name Charles G Mullighan
E-mail(s) charles.mullighan@stjude.org
Phone 1-901-595-3387
Organization name St Jude Children's Research Hospital
Department Pathology
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL3718
Series (2)
GSE9110 SNP array data for 56 chronic myeloid leukemia samples.
GSE9113 Affymetrix SNP array data for acute lymphoblastic leukemia samples

Supplementary data files not provided
Processed data not provided for this record

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