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Status |
Public on Dec 29, 2016 |
Title |
WTSUC2_rep2 |
Sample type |
SRA |
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Source name |
Seedlings
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Organism |
Arabidopsis thaliana |
Characteristics |
genotype/variation: WTSUC2
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNAs of were isolated by Trizol reagent (Invitrogen), and were treated with DNase I (Ambion) to remove DNA. mRNAs were enriched with Oligo (dT)-conjugated magnetic beads and were then sent to the Genomics Core Facilities of the Shanghai Center for Plant Stress Biology, SIBS, CAS (Shanghai, China) for library preparation and Illumina sequencing.
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
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Data processing |
Read were aligned to reference genome using TopHat. TDF files were generated by IGVTools Genome_build: TAIR10 Supplementary_files_format_and_content: TDF files with read coverage
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Submission date |
Oct 28, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Jian-Kang Zhu |
E-mail(s) |
zhu132@purdue.edu
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Organization name |
Purdue University
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Department |
Department of Horticulture and Landscape Architecture
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Street address |
625 Agriculture Mall Dr.
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City |
West Lafayette |
State/province |
IN |
ZIP/Postal code |
47907 |
Country |
USA |
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Platform ID |
GPL17639 |
Series (2) |
GSE89291 |
RNA-seq data for hdp1-1 and hdp2-1 mutants |
GSE89320 |
A Pair of Transposon-derived Proteins Function in A Histone Acetyltransferase Complex for Active DNA Demethylation |
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Relations |
BioSample |
SAMN05954293 |
SRA |
SRX2310510 |
Supplementary file |
Size |
Download |
File type/resource |
GSM2364846_tophat_DCGR003_WTSUC2_rep2_20150729.tdf |
11.0 Mb |
(ftp)(http) |
TDF |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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