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Sample GSM2364846 Query DataSets for GSM2364846
Status Public on Dec 29, 2016
Title WTSUC2_rep2
Sample type SRA
 
Source name Seedlings
Organism Arabidopsis thaliana
Characteristics genotype/variation: WTSUC2
Extracted molecule total RNA
Extraction protocol Total RNAs of were isolated by Trizol reagent (Invitrogen), and were treated with DNase I (Ambion) to remove DNA. mRNAs were enriched with Oligo (dT)-conjugated magnetic beads and were then sent to the Genomics Core Facilities of the Shanghai Center for Plant Stress Biology, SIBS, CAS (Shanghai, China) for library preparation and Illumina sequencing.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Data processing Read were aligned to reference genome using TopHat.
TDF files were generated by IGVTools
Genome_build: TAIR10
Supplementary_files_format_and_content: TDF files with read coverage
 
Submission date Oct 28, 2016
Last update date May 15, 2019
Contact name Jian-Kang Zhu
E-mail(s) zhu132@purdue.edu
Organization name Purdue University
Department Department of Horticulture and Landscape Architecture
Street address 625 Agriculture Mall Dr.
City West Lafayette
State/province IN
ZIP/Postal code 47907
Country USA
 
Platform ID GPL17639
Series (2)
GSE89291 RNA-seq data for hdp1-1 and hdp2-1 mutants
GSE89320 A Pair of Transposon-derived Proteins Function in A Histone Acetyltransferase Complex for Active DNA Demethylation
Relations
BioSample SAMN05954293
SRA SRX2310510

Supplementary file Size Download File type/resource
GSM2364846_tophat_DCGR003_WTSUC2_rep2_20150729.tdf 11.0 Mb (ftp)(http) TDF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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