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Sample GSM2363336 Query DataSets for GSM2363336
Status Public on Jan 17, 2018
Title E16.5_Six2+_mRNA_Seq_2
Sample type SRA
 
Source name developing kidneys
Organism Mus musculus
Characteristics strain: CFW
developing stage: E16.5
marker: Six2+
genotype: Six2TGC/+
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy micro kit (#74004)
Kapa stranded mRNA-Seq library (#KK8420)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing Base call by bcl2fastq v. 2.17; adaptor and index sequences were trimmed
Fastq files were aligned using TopHat2
Gene-level quantification was presented as TPM and calculated by Partek Genomic Suite
Genome_build: mm10
Supplementary_files_format_and_content: txt files containing TPM values by gene
 
Submission date Oct 28, 2016
Last update date May 15, 2019
Contact name Andrew P McMahon
E-mail(s) amcmahon@med.usc.edu
Phone 323-442-7847
Organization name University of Southern California
Department Stem Cell Biol & Regen Med
Lab Andrew McMahon
Street address 1425 San Pablo St, BCC 312
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL19057
Series (2)
GSE89264 Transcriptional profile of mouse nephron progenitor cells
GSE90017 Transcriptional and cistromic profiling of mouse nephron progenitor cells
Relations
BioSample SAMN06034603
SRA SRX2357490

Supplementary data files not provided
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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