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Sample GSM2357054 Query DataSets for GSM2357054
Status Public on Jan 06, 2017
Sample type RNA
Source name wild-type mouse embryonic stem cells, LIF
Organism Mus musculus
Characteristics genotype/variation: wild-type
cell type: mouse embryonic stem cell line
treatment: LIF
Treatment protocol Mouse embryonic stem cells were treated with LIF or 2i+LIF.
Growth protocol Standard mouse ESC medium on gelatin-coated plates at 37 ÂșC in a humidified incubator with 5% CO2.
Extracted molecule total RNA
Extraction protocol RNA was prepared using the miRNeasy Purification kit (Qiagen) following the manufacturer's recommendations. RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Manufacturer's protocol.
Hybridization protocol Manufacturer's protocol.
Scan protocol Slides were scanned on the G2565BA Microarray Scanner System (Agilent).
Description Wild-type mouse embryonic stem cells cultured with LIF, replicate 1.
Data processing GeneSpring GX. Signals were normalized to percentile.
Submission date Oct 20, 2016
Last update date Jan 06, 2017
Contact name Shinya Yamanaka
Phone 81-75-366-7041
Organization name Center for iPS Cell Research and Applicaton (CiRA), Kyoto University
Street address 53 Kawahara-machi, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL10787
Series (2)
GSE89007 Nat1 promotes translation of specific proteins that induce differentiation of mouse embryonic stem cells [expression]
GSE89012 Nat1 promotes translation of specific proteins that induce differentiation of mouse embryonic stem cells

Data table header descriptions
VALUE Normalized signal intensity

Data table
GE_BrightCorner 4.820715
DarkCorner -7.470129
A_55_P2051983 -7.0226192
A_52_P169082 -2.2130857
A_30_P01028193 -7.0697756
A_52_P237997 -7.47546
A_51_P414243 2.2997084
A_55_P2136348 -7.4656925
A_51_P108228 -2.6698313
A_30_P01033363 -3.9103813
A_55_P2049737 -7.4545455
A_30_P01024440 -0.07913017
A_30_P01025554 3.4015818
A_30_P01031558 -5.623857
A_30_P01030675 -7.445281
A_51_P328014 4.7567596
A_30_P01019108 -1.1008673
A_55_P2056220 2.4689016
A_55_P1985764 7.4585323
A_52_P108321 -1.2069988

Total number of rows: 55821

Table truncated, full table size 1333 Kbytes.

Supplementary file Size Download File type/resource
GSM2357054_1._RF8_1.txt.gz 3.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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