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Sample GSM2350221 Query DataSets for GSM2350221
Status Public on Oct 19, 2016
Title Before HSCT_1A
Sample type RNA
 
Source name Blood mononuclears
Organism Homo sapiens
Characteristics individual id: 1
treatment: Before HSCT
cell type: Blood mononuclears
Treatment protocol not applicable
Growth protocol not applicable
Extracted molecule total RNA
Extraction protocol Ribo Pure Blood Kit (Ambion)
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (GeneChip Whole Transcript Sense Target Labeling Assay)
 
Hybridization protocol cDNA was hybridized as described in the GeneChipWhole Transcript Sense Target Labeling Assay Manual (default amount of cDNA was used for each sample)
Scan protocol Affymetrix scanner
Data processing RMA background correction; Quantile normalization; Probeset summarization - mean; Log probes using base - 2
 
Submission date Oct 18, 2016
Last update date Oct 19, 2016
Contact name Miroslaw Bik-Multanowski
E-mail(s) miroslaw.bik-multanowski@uj.edu.pl
Organization name Jagiellonian University
Department Dept. of Medical Genetics
Street address ul. Wielicka 265
City Krakow
ZIP/Postal code 30 663
Country Poland
 
Platform ID GPL10739
Series (1)
GSE88852 Recipient and donor expression differences in children treated with HSCT

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
7892501 7.69711
7892502 7.03694
7892503 4.3709
7892504 6.82689
7892505 6.38853
7892506 6.75335
7892507 4.69583
7892508 8.52051
7892509 10.3537
7892510 5.40756
7892511 6.70096
7892512 6.42186
7892513 5.47195
7892514 11.0628
7892515 8.86455
7892516 5.31317
7892517 6.87616
7892518 4.86835
7892519 5.13354
7892520 8.53527

Total number of rows: 257101

Table truncated, full table size 3989 Kbytes.




Supplementary file Size Download File type/resource
GSM2350221_1a_HuGene-1_0-st-v1_2.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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