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Sample GSM2345049 Query DataSets for GSM2345049
Status Public on Jul 13, 2017
Title MV411_input
Sample type SRA
 
Source name MV4;11 cell line
Organism Homo sapiens
Characteristics cell line: MV4;11
tissue: peripheral blood
clickable molecule: none
competitor molecule: none
Growth protocol MV4;11 cells were grown in RPMI-1640 supplemented with 20% FBS, penicillin (100 U/mL), streptomycin (100 µg/mL). K562 cells were grown in MEM medium supplemented with 1% pyruvate, 1% NAA and 10% FBS.
Extracted molecule genomic DNA
Extraction protocol Lysate were isolated from formaldehybe cross-linked cells and digested with micrococcal nuclease to mononucleosomes, then incubated with the clickable molecule with/without competitor. Chem-precipitation was performed with pre-clicked biotin-tetrazine conjugated beads
NEBNext ChIP-seq library prep master mix set
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description Minput
Data processing Illumina Casava1.8.2 software was used for basecalling.
Reads were aligned to the human genome (G1k V37) using bwa 0.6.2-r126
Peak-calling was performed using MACS2
Genome_build: hg19
Supplementary_files_format_and_content: bed files from MACS2 for each sample
 
Submission date Oct 14, 2016
Last update date May 15, 2019
Contact name Mark Dawson
E-mail(s) mark.dawson@petermac.org
Organization name Peter MacCallum Cancer Centre
Street address 305 Grattan Street
City Melbourne
State/province VIC
ZIP/Postal code 3000
Country Australia
 
Platform ID GPL11154
Series (2)
GSE88749 Click chemistry enables comprehensive preclinical evaluation of targeted epigenetic therapies [Click-Seq 2]
GSE88751 Click chemistry enables comprehensive preclinical evaluation of targeted epigenetic therapies
Relations
BioSample SAMN05908468
SRA SRX2245534

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data not provided for this record

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