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Sample GSM2344336 Query DataSets for GSM2344336
Status Public on Nov 08, 2016
Title small RNA-seq from spleen (ENCLB156CLU)
Sample type SRA
 
Source name Homo sapiens spleen tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: spleen
biomaterial_type: tissue
description: Spleen tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS297IUS (SAMN05897067)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS297IUS at ENCODE; https://www.encodeproject.org/ENCBS297IUS/
link: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/0ffc0fbb-dfa3-434d-a750-61f30c485acf/@@download/attachment/LID296620.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR917CQJ/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR917CQJ
assay title: small RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB156CLU
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88644 small RNA-seq from spleen (ENCSR917CQJ)
Relations
BioSample SAMN05897067
SRA SRX2244733
Named Annotation GSM2344336_ENCFF586ONA_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344336_ENCFF505EXY_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344336_ENCFF433RZI_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344336_ENCFF428XBF_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344336_ENCFF220IOU_gene_quantifications_GRCh38.tsv.gz 282.0 Kb (ftp)(http) TSV
GSM2344336_ENCFF378OKK_plus_strand_signal_of_all_reads_hg19.bigWig 4.4 Mb (ftp)(http) BIGWIG
GSM2344336_ENCFF428XBF_minus_strand_signal_of_all_reads_GRCh38.bigWig 4.3 Mb (ftp)(http) BIGWIG
GSM2344336_ENCFF433RZI_minus_strand_signal_of_unique_reads_GRCh38.bigWig 679.0 Kb (ftp)(http) BIGWIG
GSM2344336_ENCFF505EXY_plus_strand_signal_of_all_reads_GRCh38.bigWig 4.9 Mb (ftp)(http) BIGWIG
GSM2344336_ENCFF510KGM_minus_strand_signal_of_unique_reads_hg19.bigWig 725.3 Kb (ftp)(http) BIGWIG
GSM2344336_ENCFF586ONA_plus_strand_signal_of_unique_reads_GRCh38.bigWig 708.4 Kb (ftp)(http) BIGWIG
GSM2344336_ENCFF591RXJ_plus_strand_signal_of_unique_reads_hg19.bigWig 744.6 Kb (ftp)(http) BIGWIG
GSM2344336_ENCFF711UIT_minus_strand_signal_of_all_reads_hg19.bigWig 4.4 Mb (ftp)(http) BIGWIG
GSM2344336_ENCFF948LKQ_gene_quantifications_hg19.tsv.gz 267.0 Kb (ftp)(http) TSV
GSM2344336_ENCLB156CLU_README.txt.gz 1021 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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