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Sample GSM2344290 Query DataSets for GSM2344290
Status Public on Nov 08, 2016
Title small RNA-seq from sigmoid colon (ENCLB595PHO)
Sample type SRA
Source name Homo sapiens sigmoid colon tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: sigmoid colon
biomaterial_type: tissue
description: Sigmoid colon tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS516KIQ (SAMN05897273)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS516KIQ at ENCODE;
link: Derived from ENCODE donor ENCDO845WKR;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR880LXP
assay title: small RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-05-23
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB595PHO
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL18573
Series (1)
GSE88618 small RNA-seq from sigmoid colon (ENCSR880LXP)
BioSample SAMN05897273
SRA SRX2244697
Named Annotation GSM2344290_ENCFF012HMI_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344290_ENCFF376ZDT_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344290_ENCFF478SZI_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344290_ENCFF367VOG_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344290_ENCFF012HMI_plus_strand_signal_of_unique_reads_GRCh38.bigWig 574.6 Kb (ftp)(http) BIGWIG
GSM2344290_ENCFF045KNK_gene_quantifications_GRCh38.tsv.gz 273.5 Kb (ftp)(http) TSV
GSM2344290_ENCFF367VOG_minus_strand_signal_of_all_reads_GRCh38.bigWig 3.7 Mb (ftp)(http) BIGWIG
GSM2344290_ENCFF376ZDT_minus_strand_signal_of_unique_reads_GRCh38.bigWig 537.3 Kb (ftp)(http) BIGWIG
GSM2344290_ENCFF429VLR_gene_quantifications_hg19.tsv.gz 258.9 Kb (ftp)(http) TSV
GSM2344290_ENCFF478SZI_plus_strand_signal_of_all_reads_GRCh38.bigWig 4.2 Mb (ftp)(http) BIGWIG
GSM2344290_ENCFF479CXT_minus_strand_signal_of_unique_reads_hg19.bigWig 588.1 Kb (ftp)(http) BIGWIG
GSM2344290_ENCFF611HMQ_plus_strand_signal_of_all_reads_hg19.bigWig 3.9 Mb (ftp)(http) BIGWIG
GSM2344290_ENCFF775IHU_plus_strand_signal_of_unique_reads_hg19.bigWig 631.6 Kb (ftp)(http) BIGWIG
GSM2344290_ENCFF860VFF_minus_strand_signal_of_all_reads_hg19.bigWig 3.9 Mb (ftp)(http) BIGWIG
GSM2344290_ENCLB595PHO_README.txt.gz 1022 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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