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Sample GSM2343608 Query DataSets for GSM2343608
Status Public on Nov 08, 2016
Title small RNA-seq from thyroid gland (ENCLB489WBR)
Sample type SRA
Source name Homo sapiens thyroid gland tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: thyroid gland
biomaterial_type: tissue
description: Thyroid aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS207DLU (SAMN05896977)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS207DLU at ENCODE;
link: Derived from ENCODE donor ENCDO793LXB;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's thyroid gland tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR359CVC
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-23
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB489WBR
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL18573
Series (1)
GSE88218 small RNA-seq from thyroid gland (ENCSR359CVC)
BioSample SAMN05896977
SRA SRX2243989
Named Annotation GSM2343608_ENCFF571ZUT_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343608_ENCFF438PZJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343608_ENCFF260DGE_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343608_ENCFF433JFT_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343608_ENCFF260DGE_minus_strand_signal_of_all_reads_GRCh38.bigWig 3.4 Mb (ftp)(http) BIGWIG
GSM2343608_ENCFF267WSV_gene_quantifications_hg19.tsv.gz 265.0 Kb (ftp)(http) TSV
GSM2343608_ENCFF433JFT_minus_strand_signal_of_unique_reads_GRCh38.bigWig 877.2 Kb (ftp)(http) BIGWIG
GSM2343608_ENCFF438PZJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 973.8 Kb (ftp)(http) BIGWIG
GSM2343608_ENCFF571LZP_minus_strand_signal_of_all_reads_hg19.bigWig 3.8 Mb (ftp)(http) BIGWIG
GSM2343608_ENCFF571ZUT_plus_strand_signal_of_all_reads_GRCh38.bigWig 4.1 Mb (ftp)(http) BIGWIG
GSM2343608_ENCFF649HAM_minus_strand_signal_of_unique_reads_hg19.bigWig 947.4 Kb (ftp)(http) BIGWIG
GSM2343608_ENCFF773RKW_plus_strand_signal_of_all_reads_hg19.bigWig 3.9 Mb (ftp)(http) BIGWIG
GSM2343608_ENCFF845THX_gene_quantifications_GRCh38.tsv.gz 281.5 Kb (ftp)(http) TSV
GSM2343608_ENCFF897ELQ_plus_strand_signal_of_unique_reads_hg19.bigWig 1.0 Mb (ftp)(http) BIGWIG
GSM2343608_ENCLB489WBR_README.txt.gz 1016 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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