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Sample GSM2343270 Query DataSets for GSM2343270
Status Public on Nov 08, 2016
Title small RNA-seq from stomach (ENCLB898TCC)
Sample type SRA
Source name Homo sapiens stomach tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: stomach
biomaterial_type: tissue
description: Stomach aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS141UOA (SAMN05896901)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS141UOA at ENCODE;
link: Derived from ENCODE donor ENCDO451RUA;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR133GQJ
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-23
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB898TCC
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL18573
Series (1)
GSE88057 small RNA-seq from stomach (ENCSR133GQJ)
BioSample SAMN05896901
SRA SRX2243690
Named Annotation GSM2343270_ENCFF692RXE_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343270_ENCFF011BLO_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343270_ENCFF545XSK_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343270_ENCFF658LSZ_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343270_ENCFF011BLO_minus_strand_signal_of_unique_reads_GRCh38.bigWig 671.3 Kb (ftp)(http) BIGWIG
GSM2343270_ENCFF111RUR_plus_strand_signal_of_unique_reads_hg19.bigWig 773.9 Kb (ftp)(http) BIGWIG
GSM2343270_ENCFF484GLG_gene_quantifications_GRCh38.tsv.gz 279.2 Kb (ftp)(http) TSV
GSM2343270_ENCFF504NYY_minus_strand_signal_of_all_reads_hg19.bigWig 4.6 Mb (ftp)(http) BIGWIG
GSM2343270_ENCFF545XSK_plus_strand_signal_of_unique_reads_GRCh38.bigWig 720.9 Kb (ftp)(http) BIGWIG
GSM2343270_ENCFF647XYE_gene_quantifications_hg19.tsv.gz 264.6 Kb (ftp)(http) TSV
GSM2343270_ENCFF658LSZ_plus_strand_signal_of_all_reads_GRCh38.bigWig 5.0 Mb (ftp)(http) BIGWIG
GSM2343270_ENCFF692RXE_minus_strand_signal_of_all_reads_GRCh38.bigWig 4.3 Mb (ftp)(http) BIGWIG
GSM2343270_ENCFF747JFU_plus_strand_signal_of_all_reads_hg19.bigWig 4.7 Mb (ftp)(http) BIGWIG
GSM2343270_ENCFF945ZFX_minus_strand_signal_of_unique_reads_hg19.bigWig 721.8 Kb (ftp)(http) BIGWIG
GSM2343270_ENCLB898TCC_README.txt.gz 1018 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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