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Sample GSM2343109 Query DataSets for GSM2343109
Status Public on Nov 08, 2016
Title small RNA-seq from ovary (ENCLB343BMC)
Sample type SRA
Source name Homo sapiens ovary tissue female adult (51 year)
Organism Homo sapiens
Characteristics tissue_type: ovary
biomaterial_type: tissue
description: Ovary tissue from received by the Gingeras lab to do RNA-Seq assay on from GTEx.
biosample encode accession: ENCBS711CPB (SAMN05897475)
age: 51 year
dev stage: adult
donor_id: ENCDO271OUW
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS711CPB at ENCODE;
link: Derived from ENCODE donor ENCDO271OUW;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's female gonad tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR024CRN
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB343BMC
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL18573
Series (1)
GSE87965 small RNA-seq from ovary (ENCSR024CRN)
BioSample SAMN05897475
SRA SRX2244865
Named Annotation GSM2343109_ENCFF446JTI_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343109_ENCFF850NJZ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343109_ENCFF710YFK_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343109_ENCFF847PKS_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343109_ENCFF288VBY_gene_quantifications_GRCh38.tsv.gz 273.4 Kb (ftp)(http) TSV
GSM2343109_ENCFF419DBG_gene_quantifications_hg19.tsv.gz 255.8 Kb (ftp)(http) TSV
GSM2343109_ENCFF446JTI_plus_strand_signal_of_all_reads_GRCh38.bigWig 3.9 Mb (ftp)(http) BIGWIG
GSM2343109_ENCFF542RXK_minus_strand_signal_of_unique_reads_hg19.bigWig 566.0 Kb (ftp)(http) BIGWIG
GSM2343109_ENCFF710YFK_minus_strand_signal_of_unique_reads_GRCh38.bigWig 530.9 Kb (ftp)(http) BIGWIG
GSM2343109_ENCFF847PKS_minus_strand_signal_of_all_reads_GRCh38.bigWig 3.3 Mb (ftp)(http) BIGWIG
GSM2343109_ENCFF850NJZ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 578.9 Kb (ftp)(http) BIGWIG
GSM2343109_ENCFF885VKX_plus_strand_signal_of_unique_reads_hg19.bigWig 613.6 Kb (ftp)(http) BIGWIG
GSM2343109_ENCFF904EGU_plus_strand_signal_of_all_reads_hg19.bigWig 3.4 Mb (ftp)(http) BIGWIG
GSM2343109_ENCFF909WSF_minus_strand_signal_of_all_reads_hg19.bigWig 3.4 Mb (ftp)(http) BIGWIG
GSM2343109_ENCLB343BMC_README.txt.gz 1.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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